FastQCFastQC Report
Fri 29 Apr 2016
ERR1042665.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042665.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4535961
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATTAGA12400.013.7258072
TAACCGG1356.576718E-613.70370422
TTAGGTT2601.8189894E-1213.5192314
ATTAGAG11300.013.424783
GATACGT1254.8505353E-513.3211
GTTAACG850.00941031413.0588243
TAATCCG1703.738387E-713.0588245
TTAACGG10150.012.940886535
GTATTAG14750.012.9186441
TAACGGC11000.012.10909236
CGAGACA7200.012.07638823
AACCGTA1705.3176555E-611.9705897
TCGCTAA1705.3176555E-611.97058914
ATCTCGT6650.011.96240637
TTTAACG11600.011.80172434
ATACGGT1603.768378E-511.562534
TATACAC8050.011.4906843
GTATTAA3104.1836756E-1111.338711
GTTTAAC12400.011.3387133
GTGTAAG6400.011.27343751
Produced by FastQC (version 0.11.5)