Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042661.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5097788 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 54 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TATACAC | 1305 | 0.0 | 17.578543 | 3 |
TACACAT | 1515 | 0.0 | 15.141914 | 5 |
TTATACA | 1540 | 0.0 | 15.016233 | 2 |
ATACACA | 1940 | 0.0 | 14.590206 | 4 |
TAGAACG | 115 | 2.2126802E-5 | 14.478261 | 4 |
TTAGACT | 310 | 0.0 | 14.32258 | 4 |
ATCTCGT | 1415 | 0.0 | 13.9894 | 37 |
GTCGGGA | 1355 | 0.0 | 13.926199 | 2 |
ATCTCCG | 1565 | 0.0 | 13.7124605 | 10 |
CGTTAGA | 110 | 2.458956E-4 | 13.454545 | 2 |
GGTATCA | 12145 | 0.0 | 13.343762 | 1 |
CCTCTAG | 1190 | 0.0 | 13.214285 | 1 |
TATTAGA | 1250 | 0.0 | 13.171999 | 2 |
ATAGAAC | 285 | 0.0 | 12.982456 | 3 |
ACGAGAC | 1640 | 0.0 | 12.74695 | 22 |
CCCACGA | 1725 | 0.0 | 12.655072 | 19 |
ATTAGAG | 1165 | 0.0 | 12.545064 | 3 |
TTTAGCG | 285 | 9.094947E-12 | 12.333333 | 26 |
TATACTG | 405 | 0.0 | 12.333333 | 5 |
CTCTCTA | 1725 | 0.0 | 12.11884 | 29 |