FastQCFastQC Report
Fri 29 Apr 2016
ERR1042655.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042655.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1685523
Sequences flagged as poor quality0
Sequence length43
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT535673.1780640192984615No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT456162.706340999203215No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT263081.5608211813187955No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT243551.4449521009206043No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT88740.5264834713023792No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA77370.4590266641273955No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60140.356803199956334No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA54050.3206719813375433No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT53230.3158070225087406No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT52800.3132558855619294No Hit
GTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAA50160.29759309128383293No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT46520.27599742038524544No Hit
GTACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA28620.16979892887845494No Hit
GAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA24470.14517749090341692No Hit
GAGTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAA24420.14488084707239235No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24130.14316031285244996No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23520.13954125811395038No Hit
ACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAA21820.12945536785911554No Hit
GTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAA18530.10993620377769986No Hit
GAGTACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA18220.1080970120253476No Hit
GTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAA17890.10613916274058556No Hit
GTACATGGGAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAA17750.10530856001371681No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17440.10346936826136456No Hit
ACGCAGAGTACATGGGAATGGTATCAACGCAAAAAAAAAAAAA17020.10097756008075832No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT16980.10074024501593867No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGACCG451.3235699E-424.66666818
CTAGCGG753.7429163E-722.19999929
CGACCGT603.7276146E-521.58333219
TACCGAC851.2460132E-619.5882367
TATACCG951.677272E-719.4736845
ATACCGA951.677272E-719.4736846
TGCGACG701.21962556E-418.522
GTACTAG1258.58563E-917.761
TACTAGG2200.017.659092
CGCGAGG1054.8005495E-717.61904734
ATGCGAC1054.8005495E-717.61904721
GTCGGGA1800.017.4722232
GTTCGAC752.0679878E-417.26666616
GGTATCA171100.017.0295141
AACAGTG16150.016.839012
CGGGAGT1901.8189894E-1216.5526314
TCTAGCG904.447936E-516.44444528
ACCTCGC904.447936E-516.44444520
TATACTG1708.54925E-1116.323535
GAACAGT16350.016.293581