FastQCFastQC Report
Fri 29 Apr 2016
ERR1042649.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042649.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2723757
Sequences flagged as poor quality0
Sequence length43
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT926433.401294608880308No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT731822.6868035584672203No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT441681.6215837169027927No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT424021.5567468023028486No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT138360.5079748303538091No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA125710.46153162708714474No Hit
GTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAA99740.36618538291044317No Hit
GAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA99070.36372554526707046No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT96460.35414319265631994No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT92920.34114643854058935No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT84760.31118781888399No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT77170.2833218969239914No Hit
GTACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA59070.21686956655825024No Hit
GAATGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA51500.189077072587606No Hit
ACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAA49310.1810367077532981No Hit
GAGTACATGGGAATGGTATCAACGCAAAAAAAAAAAAAAAAAA47930.17597017648784383No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37970.13940303778934757No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT37610.1380813339809682No Hit
GAGTACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA36500.13400608057179844No Hit
GTACATGGGAAGCAGAGGTATCAACGCAAAAAAAAAAAAAAAA34670.12728741954586992No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33240.1220373183070296No Hit
GTACATGGGAAGCATGGTATCAACGCAAAAAAAAAAAAAAAAA31270.11480466135562019No Hit
TATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAAAA30460.11183082778676659No Hit
GTACATGGGAACAGTGGTATCAACGCAAAAAAAAAAAAAAAAA30330.11135354585596292No Hit
ACGCAGAGTACATGGGAATGGTATCAACGCAAAAAAAAAAAAA29550.10848985427114091No Hit
GGTATCAACGCAGAGTACATGGGGAAAAAAAAAAAAAAAAAAA28730.10547930670761012No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGACTAT702.0736479E-1029.07142836
TAAGCGA656.906567E-519.92307710
CGTTATA951.6782178E-719.4736842
CTAGCGG1457.2759576E-1219.1379329
GAACAGT28050.018.2032091
AACAGTG28750.017.6956522
GCGCAAG3050.017.5901641
TCTAGCG1655.4569682E-1116.8181828
ACAGTGG29800.016.6996653
AACTCGC700.002593716615.85714217
GGTATCA289050.015.62307551
CGGCGAT3800.015.57894830
AAGACGG3350.015.4626865
TATACCG1353.977657E-715.0740755
TATACTG2600.014.9423075
TAACGCC3050.014.5573774
AGCCGTC1152.211931E-514.47826112
GTCGGGA2301.8189894E-1214.4782612
ACGGACC3600.014.3888888
CGGGAGT2450.014.3469384