Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042641.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21585267 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 68627 | 0.31793445038229085 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 54370 | 0.2518847693660681 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 38513 | 0.1784226250247449 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 22449 | 0.10400149324073685 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 19745 | 0.0 | 27.377562 | 1 |
GTATCAA | 28435 | 0.0 | 19.043257 | 2 |
CGAACGA | 1535 | 0.0 | 15.306189 | 16 |
GACGGAC | 2895 | 0.0 | 15.081175 | 7 |
ACGGACC | 3020 | 0.0 | 15.069537 | 8 |
TATACTG | 5050 | 0.0 | 14.543564 | 5 |
ACGAACG | 1650 | 0.0 | 14.01515 | 15 |
TCAACGC | 38690 | 0.0 | 13.981391 | 5 |
ATCAACG | 39005 | 0.0 | 13.911166 | 4 |
TATCAAC | 39755 | 0.0 | 13.802289 | 3 |
CAACGCA | 39550 | 0.0 | 13.672693 | 6 |
AACGCAG | 39850 | 0.0 | 13.630114 | 7 |
ATAACGC | 2200 | 0.0 | 13.622726 | 3 |
TAGACAG | 4555 | 0.0 | 13.605927 | 5 |
TAACGCC | 1970 | 0.0 | 13.522843 | 4 |
TACGACG | 1830 | 0.0 | 13.445354 | 5 |
TACCGTC | 2120 | 0.0 | 13.43868 | 7 |
CTTACAC | 4105 | 0.0 | 13.249696 | 3 |
TCGTTTA | 1875 | 0.0 | 13.2213335 | 30 |
CCGATAA | 1855 | 0.0 | 13.16442 | 9 |