FastQCFastQC Report
Fri 29 Apr 2016
ERR1042641.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042641.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21585267
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT686270.31793445038229085No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT543700.2518847693660681No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT385130.1784226250247449No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT224490.10400149324073685No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA197450.027.3775621
GTATCAA284350.019.0432572
CGAACGA15350.015.30618916
GACGGAC28950.015.0811757
ACGGACC30200.015.0695378
TATACTG50500.014.5435645
ACGAACG16500.014.0151515
TCAACGC386900.013.9813915
ATCAACG390050.013.9111664
TATCAAC397550.013.8022893
CAACGCA395500.013.6726936
AACGCAG398500.013.6301147
ATAACGC22000.013.6227263
TAGACAG45550.013.6059275
TAACGCC19700.013.5228434
TACGACG18300.013.4453545
TACCGTC21200.013.438687
CTTACAC41050.013.2496963
TCGTTTA18750.013.221333530
CCGATAA18550.013.164429