Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042634.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6765280 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 19782 | 0.2924047489534801 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18050 | 0.2668034434642764 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 13401 | 0.19808492774874062 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 6645 | 0.0 | 21.437172 | 1 |
GTATCAA | 9435 | 0.0 | 15.058824 | 2 |
TATACTG | 1020 | 0.0 | 14.872549 | 5 |
TCTAGCG | 500 | 0.0 | 14.059999 | 28 |
GTATTAG | 1505 | 0.0 | 13.890365 | 1 |
CCTATAC | 970 | 0.0 | 13.731958 | 3 |
GTACTAG | 540 | 0.0 | 13.703703 | 1 |
GTAAACG | 545 | 0.0 | 13.577982 | 27 |
TACCGAC | 205 | 1.4279067E-9 | 13.536586 | 7 |
TAGACTA | 605 | 0.0 | 13.454546 | 5 |
TTAGACT | 625 | 0.0 | 13.32 | 4 |
TACCGTC | 730 | 0.0 | 13.178082 | 7 |
TATACCG | 340 | 0.0 | 13.058824 | 5 |
TAATACT | 1460 | 0.0 | 13.05137 | 4 |
CGTCGTA | 625 | 0.0 | 12.728 | 10 |
GTAAGAC | 890 | 0.0 | 12.679776 | 3 |
GTGTAAG | 1330 | 0.0 | 12.657894 | 1 |
GTATAGG | 1010 | 0.0 | 12.638615 | 1 |
CTAATAC | 1470 | 0.0 | 12.585033 | 3 |
ATTAGAC | 560 | 0.0 | 12.553572 | 3 |