Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042633.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 8821088 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 30423 | 0.3448894286056323 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26897 | 0.30491703517752006 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 20108 | 0.22795373994681836 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11019 | 0.1249165635803656 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9465 | 0.0 | 22.145271 | 1 |
GACGGAC | 1010 | 0.0 | 17.034653 | 7 |
ACGGACC | 1110 | 0.0 | 15.666667 | 8 |
CTAGCGG | 520 | 0.0 | 15.653846 | 29 |
GTATCAA | 13460 | 0.0 | 15.503715 | 2 |
GTATTAG | 1835 | 0.0 | 15.122616 | 1 |
TATACTG | 1685 | 0.0 | 14.0534115 | 5 |
TCTAGCG | 590 | 0.0 | 13.79661 | 28 |
CGGACCA | 1250 | 0.0 | 13.764 | 9 |
TAACGCC | 715 | 0.0 | 13.713286 | 4 |
TACCGTC | 795 | 0.0 | 13.264151 | 7 |
CGCAAGA | 1495 | 0.0 | 12.993311 | 2 |
CGCAATA | 670 | 0.0 | 12.977612 | 36 |
ATTGACG | 1090 | 0.0 | 12.559633 | 32 |
ATAACGC | 945 | 0.0 | 12.5291 | 3 |
AGACGGA | 1410 | 0.0 | 12.464539 | 6 |
ATACCGC | 1055 | 0.0 | 12.450237 | 27 |
TCTATAC | 1220 | 0.0 | 12.434426 | 3 |
GTACATG | 19725 | 0.0 | 12.258302 | 1 |
AACGCAG | 17150 | 0.0 | 12.254227 | 7 |