Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042630.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 480156 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 1842 | 0.38362532177042463 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1472 | 0.3065670323811428 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 604 | 0.12579245078682763 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 564 | 0.11746182490690527 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTTTA | 30 | 3.5963856E-4 | 30.833332 | 30 |
TAGGCCG | 25 | 0.0054931953 | 29.6 | 5 |
GGTATCA | 485 | 0.0 | 25.175259 | 1 |
ACGGACC | 155 | 0.0 | 23.870968 | 8 |
TAACGCC | 40 | 0.001929559 | 23.125 | 4 |
TATACTG | 50 | 2.6989277E-4 | 22.2 | 5 |
GTATCAA | 565 | 0.0 | 21.283186 | 2 |
CGGACCA | 175 | 0.0 | 21.142857 | 9 |
TAAACAG | 80 | 6.942755E-7 | 20.8125 | 5 |
TTAGGGT | 45 | 0.0038226128 | 20.555555 | 4 |
TCGTATT | 45 | 0.0038226128 | 20.555555 | 2 |
TCGTTCG | 55 | 5.1370997E-4 | 20.18182 | 37 |
GTCTCGT | 55 | 5.1370997E-4 | 20.18182 | 34 |
TCGAGTT | 55 | 5.1370997E-4 | 20.18182 | 29 |
GACGGAC | 185 | 0.0 | 20.0 | 7 |
CTCGAGT | 65 | 6.891438E-5 | 19.923077 | 28 |
AGACGGA | 205 | 0.0 | 18.951218 | 6 |
ATCTCGT | 80 | 1.6134783E-5 | 18.5 | 25 |
TTATACT | 80 | 1.6134783E-5 | 18.5 | 4 |
GTAGCAC | 50 | 0.007029062 | 18.5 | 3 |