FastQCFastQC Report
Fri 29 Apr 2016
ERR1042630.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042630.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480156
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT18420.38362532177042463No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT14720.3065670323811428No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT6040.12579245078682763No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT5640.11746182490690527No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTTA303.5963856E-430.83333230
TAGGCCG250.005493195329.65
GGTATCA4850.025.1752591
ACGGACC1550.023.8709688
TAACGCC400.00192955923.1254
TATACTG502.6989277E-422.25
GTATCAA5650.021.2831862
CGGACCA1750.021.1428579
TAAACAG806.942755E-720.81255
TTAGGGT450.003822612820.5555554
TCGTATT450.003822612820.5555552
TCGTTCG555.1370997E-420.1818237
GTCTCGT555.1370997E-420.1818234
TCGAGTT555.1370997E-420.1818229
GACGGAC1850.020.07
CTCGAGT656.891438E-519.92307728
AGACGGA2050.018.9512186
ATCTCGT801.6134783E-518.525
TTATACT801.6134783E-518.54
GTAGCAC500.00702906218.53