Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042629.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4002450 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 52 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2190 | 0.0 | 19.598173 | 1 |
CTACGCT | 150 | 2.5283953E-10 | 17.266666 | 4 |
GACGGAC | 655 | 0.0 | 15.534351 | 7 |
ACGGACC | 645 | 0.0 | 15.488372 | 8 |
AACGGTA | 110 | 1.4535806E-5 | 15.136364 | 18 |
CTAGTAC | 310 | 0.0 | 14.919354 | 3 |
GCGAAAG | 740 | 0.0 | 14.75 | 18 |
TATACTG | 580 | 0.0 | 14.672415 | 5 |
GTAAACG | 410 | 0.0 | 14.439025 | 27 |
GTATCAA | 2975 | 0.0 | 14.302521 | 2 |
TAGTACT | 420 | 0.0 | 14.095238 | 4 |
GTGTAAG | 670 | 0.0 | 14.082089 | 1 |
TTAGACT | 385 | 0.0 | 13.935064 | 4 |
AAGACGG | 850 | 0.0 | 13.711765 | 5 |
GTATTAG | 920 | 0.0 | 13.673913 | 1 |
GTATAGG | 530 | 0.0 | 13.613208 | 1 |
GTATTAA | 355 | 0.0 | 13.549296 | 1 |
CGAAAGC | 780 | 0.0 | 13.519231 | 19 |
TAGGACG | 220 | 2.8558134E-10 | 13.454545 | 4 |
AATAACG | 500 | 0.0 | 13.320001 | 2 |