FastQCFastQC Report
Fri 29 Apr 2016
ERR1042629.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042629.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4002450
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA21900.019.5981731
CTACGCT1502.5283953E-1017.2666664
GACGGAC6550.015.5343517
ACGGACC6450.015.4883728
AACGGTA1101.4535806E-515.13636418
CTAGTAC3100.014.9193543
GCGAAAG7400.014.7518
TATACTG5800.014.6724155
GTAAACG4100.014.43902527
GTATCAA29750.014.3025212
TAGTACT4200.014.0952384
GTGTAAG6700.014.0820891
TTAGACT3850.013.9350644
AAGACGG8500.013.7117655
GTATTAG9200.013.6739131
GTATAGG5300.013.6132081
GTATTAA3550.013.5492961
CGAAAGC7800.013.51923119
TAGGACG2202.8558134E-1013.4545454
AATAACG5000.013.3200012