FastQCFastQC Report
Fri 29 Apr 2016
ERR1042628.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042628.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539152
Sequences flagged as poor quality0
Sequence length43
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTACGA250.00549378829.5999982
GCGTAAC400.001929864523.12500211
GTCCTAT502.699525E-422.1999991
ACCCGTT705.093636E-621.14285730
GATCGTC450.003823212320.55555718
TATTACA555.138228E-420.1818182
GTATTAC656.8934474E-519.9230771
AACCCGT759.250816E-619.73333429
CCGTTGA801.6140773E-518.532
ACGGTCC609.228146E-418.58
CTATGCT500.007030157418.4999989
GAGTAAG500.007030157418.4999981
TAAGACT500.007030157418.4999984
GGTATCA2650.017.452831
CCCGTTG852.718775E-517.41176431
GATTAAG1401.8608262E-917.1785721
GTACCAA650.001578463717.0769231
CTACCCA650.001578463717.0769234
GCGTCAC650.001578463717.07692316
GCCGTAG650.001578463717.0769231
Produced by FastQC (version 0.11.5)