FastQCFastQC Report
Fri 29 Apr 2016
ERR1042627.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042627.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4330297
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCGTTTA3900.017.55128330
GGTATCA20000.017.2051
TACACCG4150.016.0481935
GTATAAG5150.015.0873791
ATAACGC5150.014.7281563
GACGGAC5300.014.6603777
TAACGCC5350.014.5233654
TATACCG2201.8189894E-1114.2954545
GTATACT3900.014.230774
CGAACGA2600.014.23076916
TATAAGG5200.014.2307692
CGTTTAT5050.013.92079231
GTATTAG7100.013.5492961
GTGTTAG6900.013.4057971
GTTAGCC5250.013.3904753
ATAGTAC4150.013.3734943
ACGGACC5150.013.2912638
GTATTAA3350.013.2537321
CTTACAC6300.013.2142853
AATAACG5350.013.1401872
Produced by FastQC (version 0.11.5)