FastQCFastQC Report
Fri 29 Apr 2016
ERR1042626.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042626.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3034933
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA11250.019.8977781
TATACTG4950.015.696975
GTACTAG2055.456968E-1215.3414641
GTTATAC1853.0559022E-1015.03
CGTAATA750.0041064714.82
TATAGCG1001.09430264E-414.85
GTATCAA15300.014.7516342
TAGACGT2059.276846E-1114.4390254
CGCGCTA3250.014.23076924
CTAGTAC2101.364242E-1014.0952393
TAGTACA2650.013.9622634
TAGTACT2950.013.796614
GTATTAG4900.013.5918381
ACGCGCG3550.013.54929621
TATTAGA3150.013.50793652
CTTACAC5150.013.2912623
GTATTAA2651.8189894E-1213.264151
TGTATAC3000.012.953
ATACTGT5900.012.8559326
CGATTTG2451.1459633E-1012.83673628
Produced by FastQC (version 0.11.5)