FastQCFastQC Report
Fri 29 Apr 2016
ERR1042625.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042625.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5642468
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT132630.23505671631633535No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT118910.2107411154126173No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT84400.14957993558846944No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA48800.020.964141
CTAGTAC5600.016.18753
TCTAACG1606.311893E-1016.18752
TAGACCG957.067497E-515.5789485
CGCGAAT1802.0190782E-1015.41666635
GTATCAA67150.015.1526432
TCTATAC7700.015.1363633
CTAACGC1853.0559022E-1015.03
TATACTG10100.014.8366345
TCTAGCG3550.014.59154928
TAACGCC5900.014.4237294
GTATAAG10700.014.0046731
GTACTAG5300.013.9622631
TAGTACT7300.013.9383564
TACGACG4350.013.6091965
TTACACT9400.013.3829794
CGAACGA2651.8189894E-1213.2641516
TGCGACG2800.013.21428522
TAATACT11100.013.1666674
TAGGACG3800.013.1447374