Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042621.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5738315 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 9899 | 0.17250708613939805 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8815 | 0.15361652331738498 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 6562 | 0.11435412660336702 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4525 | 0.0 | 18.683977 | 1 |
GTACTAG | 435 | 0.0 | 17.86207 | 1 |
GACGGAC | 665 | 0.0 | 16.135338 | 7 |
TATACTG | 1040 | 0.0 | 15.475962 | 5 |
CTAATCG | 225 | 1.8189894E-12 | 14.8 | 26 |
ACGGACC | 755 | 0.0 | 14.456954 | 8 |
GCGTTAT | 510 | 0.0 | 14.1470585 | 1 |
TAGACCG | 105 | 1.6574495E-4 | 14.095239 | 5 |
AACGGTA | 215 | 1.9826984E-10 | 13.767442 | 18 |
TCTATAC | 785 | 0.0 | 13.66879 | 3 |
TACACTG | 1795 | 0.0 | 13.501393 | 5 |
GTAAACG | 425 | 0.0 | 13.494118 | 27 |
GTATCAA | 6225 | 0.0 | 13.49237 | 2 |
TATACCG | 280 | 0.0 | 13.214285 | 5 |
CTTACAC | 1015 | 0.0 | 13.123153 | 3 |
CGTTATT | 480 | 0.0 | 13.104167 | 2 |
CTACACT | 1625 | 0.0 | 12.978463 | 4 |
ATTGACG | 555 | 0.0 | 12.666667 | 32 |
GGGTACG | 220 | 4.096364E-9 | 12.613636 | 1 |
TTATACT | 1225 | 0.0 | 12.534694 | 4 |