FastQCFastQC Report
Fri 29 Apr 2016
ERR1042617.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042617.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7323799
Sequences flagged as poor quality0
Sequence length43
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT310610.42411049238243703No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT295320.40323334924948107No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT209610.28620392230862696No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT110260.15055028134988413No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA99950.021.1745871
GACGGAC8650.019.2485567
ACGGACC10550.015.781998
GTATCAA137600.015.3001452
CGGACCA11900.014.7689079
AAGACGG14850.014.7003365
CGCGAAC3150.014.6825428
GTACTAG5700.014.2807031
CGAACGA3500.014.27142916
TTAGACT7000.014.2714294
TACGACG5200.014.2307695
TAACGCC8750.014.1657144
GTAAACG6250.013.91227
TCTATAC9600.013.6822913
TATACCG3950.013.5822785
CGAAAGC12550.013.56175219
TACGGGT2750.013.4545454
TTAGGAC9100.013.4175833
CGCAAGA14150.013.20494652
GAGCGAA13050.012.90038316