Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042617.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 7323799 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 31061 | 0.42411049238243703 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 29532 | 0.40323334924948107 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 20961 | 0.28620392230862696 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11026 | 0.15055028134988413 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 9995 | 0.0 | 21.174587 | 1 |
GACGGAC | 865 | 0.0 | 19.248556 | 7 |
ACGGACC | 1055 | 0.0 | 15.78199 | 8 |
GTATCAA | 13760 | 0.0 | 15.300145 | 2 |
CGGACCA | 1190 | 0.0 | 14.768907 | 9 |
AAGACGG | 1485 | 0.0 | 14.700336 | 5 |
CGCGAAC | 315 | 0.0 | 14.68254 | 28 |
GTACTAG | 570 | 0.0 | 14.280703 | 1 |
CGAACGA | 350 | 0.0 | 14.271429 | 16 |
TTAGACT | 700 | 0.0 | 14.271429 | 4 |
TACGACG | 520 | 0.0 | 14.230769 | 5 |
TAACGCC | 875 | 0.0 | 14.165714 | 4 |
GTAAACG | 625 | 0.0 | 13.912 | 27 |
TCTATAC | 960 | 0.0 | 13.682291 | 3 |
TATACCG | 395 | 0.0 | 13.582278 | 5 |
CGAAAGC | 1255 | 0.0 | 13.561752 | 19 |
TACGGGT | 275 | 0.0 | 13.454545 | 4 |
TTAGGAC | 910 | 0.0 | 13.417583 | 3 |
CGCAAGA | 1415 | 0.0 | 13.2049465 | 2 |
GAGCGAA | 1305 | 0.0 | 12.900383 | 16 |