FastQCFastQC Report
Fri 29 Apr 2016
ERR1042613.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042613.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4433188
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA21850.016.933641
CGAACGA2450.016.61224616
TATACTG6200.016.1129025
TCGTTTA3750.015.78666830
TAGTACT4750.015.5789474
AACGGTA1201.9384406E-615.41666618
CTAGTAC3200.015.0312513
GACGGAC5150.014.3689327
TATAGAC3500.014.2714283
TAGACAG7500.014.0600015
GCTATAC3600.013.8750013
TAACGAA2950.013.7966113
GTACTAG3800.013.6315791
ACGAACG3000.013.56666715
ATAACGC5000.013.323
TCTAGAC5300.013.264153
TCTATAC4050.013.2469143
CTAGACA6750.013.1555564
AAGACGG7200.013.1041675
CCGATAA3400.013.0588249
Produced by FastQC (version 0.11.5)