FastQCFastQC Report
Fri 29 Apr 2016
ERR1042611.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042611.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2701428
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTAAC502.703411E-422.21
TAGTACT2100.021.1428594
GGTATCA12200.020.3196721
CTAGTAC2750.017.490913
GTATTAA1950.017.0769231
TAGGTCG2200.016.81818221
CCTATAC2550.016.6862743
TATACTG3700.016.55
GACGGAC3650.016.2191777
ACGGACC3550.015.6338038
GTATCAA15300.015.5980392
GGACCGT1557.221388E-915.51612956
CCTAGTA4100.015.3414632
TATACCG1601.0983058E-815.031255
ATACCGC3450.015.01449327
TTAGCGA750.004106314414.827
TATATAC1508.113602E-814.83
ATATACT2650.014.66037754
TAGGGTC2059.276846E-1114.4390245
CTATATA2450.014.3469382
Produced by FastQC (version 0.11.5)