FastQCFastQC Report
Fri 29 Apr 2016
ERR1042610.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042610.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8798149
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA39350.020.1219831
CTAGTAC6050.014.9834723
GTATCAA52350.014.9484242
TATACTG14800.014.255
CTTACAC12050.013.3568473
GACGGAC10050.012.8855727
GTGTAAG11900.012.7478991
GTATTAA11950.012.5397491
CTATACT10600.012.391514
GCGTTAG2102.8989234E-812.3333341
ACGGACC10500.012.3333348
CCTATAC8750.012.2628573
ACGAACG5150.012.21359215
TTATACT13550.012.1512924
TTAGACT7850.012.0191094
TCGCGCT3700.012.011
TCAACGC64650.011.9327145
TCTATAC8450.011.8224853
ATCAACG65450.011.78685954
CGAACGA5550.011.66666816
Produced by FastQC (version 0.11.5)