FastQCFastQC Report
Fri 29 Apr 2016
ERR1042606.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042606.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7099766
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA30750.021.7186991
TATACTG14250.015.3192995
GTATCAA45250.014.5138122
CTAACGC2405.456968E-1213.8750013
TTAGACT7900.013.5822784
TACACTG23550.013.5116785
TTATACC11100.013.3333334
CGTATTA3250.013.09230715
CTAGTAC5800.013.0775863
ACGCGTG850.00941100113.05882419
CTAGACT8700.012.9712654
TAGACTG10450.012.9234455
ATACGCG1451.3742327E-512.7586230
TAATACT15250.012.7377054
CTACACT18350.012.7029974
GTACTAG6150.012.6341461
TATACCG3400.012.5147065
GTATAAG11000.012.4454551
TAGACAG13250.012.42641455
GTGTAAG15450.012.3333341
Produced by FastQC (version 0.11.5)