FastQCFastQC Report
Fri 29 Apr 2016
ERR1042605.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042605.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1492765
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA10250.020.7560981
CGTACAA1202.382876E-1020.04166833
TATACTG2500.019.245
ACGTTTA1355.638867E-1119.18518626
TGCACCG1551.8189894E-1219.0967755
CGTTAGA1501.2732926E-1118.52
GTATACT2250.018.0888884
GCGTTAG1552.1827873E-1117.9032271
TATACCG2300.017.6956525
CGTCATT2000.017.57526
TATCGTC852.723997E-517.41176623
TACCGAC1655.4569682E-1116.8181827
GTCGTCA2000.016.65000224
CGGGCGT2500.016.2799996
GCGGTTA1151.2427263E-616.08695630
CCCGTAT1504.6729838E-916.0333331
CCTATAG1059.346757E-615.8571441
TATAGAC1403.4749974E-815.8571423
ATACCGA2250.015.6222226
TAAAACG957.061932E-515.5789484
Produced by FastQC (version 0.11.5)