Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042598.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 12227583 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 28108 | 0.22987372075086304 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23106 | 0.18896620861211902 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 19168 | 0.15676033440132853 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8435 | 0.0 | 26.165382 | 1 |
GTATCAA | 12835 | 0.0 | 17.037008 | 2 |
TCTAGCG | 830 | 0.0 | 16.939758 | 28 |
GACGGAC | 1770 | 0.0 | 16.096045 | 7 |
ACGGACC | 1920 | 0.0 | 15.609374 | 8 |
CTAGCGG | 965 | 0.0 | 15.145078 | 29 |
TCTATAC | 1675 | 0.0 | 15.131345 | 3 |
TATACTG | 2415 | 0.0 | 14.937888 | 5 |
TCGTTTA | 1030 | 0.0 | 13.830096 | 30 |
CGCAATA | 1160 | 0.0 | 13.556034 | 36 |
AAGACGG | 2480 | 0.0 | 13.502016 | 5 |
TATACCG | 510 | 0.0 | 13.421569 | 5 |
TAGTACT | 1420 | 0.0 | 13.288733 | 4 |
CTAGTAC | 1080 | 0.0 | 13.189814 | 3 |
ATCAACG | 16815 | 0.0 | 13.026464 | 4 |
CGGACCA | 2275 | 0.0 | 13.010989 | 9 |
TCAACGC | 17005 | 0.0 | 12.870039 | 5 |
CGCGCTA | 1555 | 0.0 | 12.848875 | 24 |
GTATTAG | 2500 | 0.0 | 12.654 | 1 |
CGAACGA | 830 | 0.0 | 12.481928 | 16 |