Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042597.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5343194 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15612 | 0.2921847868522086 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 14475 | 0.2709053798158929 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 7170 | 0.1341894005720174 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5820 | 0.0 | 19.135738 | 1 |
ACGGACC | 870 | 0.0 | 17.436783 | 8 |
GACGGAC | 900 | 0.0 | 16.444445 | 7 |
CGGACCA | 1055 | 0.0 | 15.255924 | 9 |
GTATCAA | 7365 | 0.0 | 14.970808 | 2 |
TATACTG | 1060 | 0.0 | 14.834906 | 5 |
CGTCGTA | 415 | 0.0 | 14.710843 | 10 |
TACGACG | 485 | 0.0 | 14.494845 | 5 |
TAACGCC | 615 | 0.0 | 14.439025 | 4 |
TACCGTC | 500 | 0.0 | 14.429999 | 7 |
AAGACGG | 1240 | 0.0 | 14.32258 | 5 |
TAAGACT | 780 | 0.0 | 13.993588 | 4 |
AGACGGA | 1165 | 0.0 | 13.974249 | 6 |
TCGTTTA | 625 | 0.0 | 13.912 | 30 |
ATAACGC | 790 | 0.0 | 13.816456 | 3 |
GTATTAG | 1230 | 0.0 | 13.686993 | 1 |
CTTACAC | 960 | 0.0 | 13.489584 | 3 |
TACACTG | 1910 | 0.0 | 13.46335 | 5 |
TCTATAC | 730 | 0.0 | 13.431507 | 3 |
GTAAGAC | 675 | 0.0 | 13.42963 | 3 |