Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042593.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9549241 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 13434 | 0.1406813379199457 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 12519 | 0.131099424551124 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7330 | 0.0 | 16.329468 | 1 |
TCGCTAA | 245 | 0.0 | 14.34694 | 14 |
TAACGCC | 950 | 0.0 | 14.21579 | 4 |
GACGGAC | 1320 | 0.0 | 13.594696 | 7 |
TATACTG | 1650 | 0.0 | 13.454546 | 5 |
TACGACG | 830 | 0.0 | 13.150602 | 5 |
ACGGACC | 1340 | 0.0 | 13.115671 | 8 |
CTTACAC | 1725 | 0.0 | 12.869565 | 3 |
GCGTTAG | 245 | 1.1459633E-10 | 12.836736 | 1 |
ACGACGG | 810 | 0.0 | 12.790123 | 6 |
TCTAGCG | 750 | 0.0 | 12.580001 | 28 |
TCGTTTA | 945 | 0.0 | 12.5291 | 30 |
TTAACGG | 355 | 0.0 | 12.507043 | 35 |
CGCGCTA | 905 | 0.0 | 12.469613 | 24 |
GTATTAG | 2005 | 0.0 | 12.456359 | 1 |
GTAAACG | 820 | 0.0 | 12.408536 | 27 |
ATAACGC | 1110 | 0.0 | 12.333334 | 3 |
TCTATAC | 1115 | 0.0 | 12.278027 | 3 |
CTAGTAC | 800 | 0.0 | 12.25625 | 3 |
TCTAGAC | 1050 | 0.0 | 12.157144 | 3 |