Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042592.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 2680664 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7063 | 0.26347949612484073 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 6561 | 0.24475279259168625 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 3818 | 0.14242739858482822 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 3067 | 0.11441195166570671 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAATGCG | 345 | 0.0 | 20.913044 | 19 |
TGCGACG | 350 | 0.0 | 20.085714 | 22 |
GTACTAG | 410 | 0.0 | 19.85366 | 1 |
ACGGACC | 665 | 0.0 | 18.6391 | 8 |
TAGACCG | 50 | 0.007037268 | 18.5 | 5 |
CGCAAGA | 705 | 0.0 | 18.368793 | 2 |
CGACGAG | 465 | 0.0 | 17.903225 | 24 |
CGGACCA | 735 | 0.0 | 17.619047 | 9 |
ATCGTCA | 410 | 0.0 | 17.597563 | 10 |
GACGGAC | 710 | 0.0 | 17.457747 | 7 |
CTAGACA | 350 | 0.0 | 17.442856 | 4 |
GGTATCA | 3455 | 0.0 | 17.402317 | 1 |
ATGCGAC | 450 | 0.0 | 16.855556 | 21 |
TACTAGG | 450 | 0.0 | 16.855556 | 2 |
CGTATAC | 245 | 0.0 | 16.612244 | 3 |
TCTAGCG | 390 | 0.0 | 16.602564 | 28 |
CTAGTAC | 360 | 0.0 | 16.444445 | 3 |
GTAAACG | 405 | 0.0 | 16.444445 | 27 |
TAGGCAT | 625 | 0.0 | 16.28 | 5 |
CTAGGCA | 640 | 0.0 | 16.1875 | 4 |