FastQCFastQC Report
Fri 29 Apr 2016
ERR1042592.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042592.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2680664
Sequences flagged as poor quality0
Sequence length43
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT70630.26347949612484073No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT65610.24475279259168625No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT38180.14242739858482822No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT30670.11441195166570671No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAATGCG3450.020.91304419
TGCGACG3500.020.08571422
GTACTAG4100.019.853661
ACGGACC6650.018.63918
TAGACCG500.00703726818.55
CGCAAGA7050.018.3687932
CGACGAG4650.017.90322524
CGGACCA7350.017.6190479
ATCGTCA4100.017.59756310
GACGGAC7100.017.4577477
CTAGACA3500.017.4428564
GGTATCA34550.017.4023171
ATGCGAC4500.016.85555621
TACTAGG4500.016.8555562
CGTATAC2450.016.6122443
TCTAGCG3900.016.60256428
CTAGTAC3600.016.4444453
GTAAACG4050.016.44444527
TAGGCAT6250.016.285
CTAGGCA6400.016.18754