FastQCFastQC Report
Fri 29 Apr 2016
ERR1042591.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042591.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6432709
Sequences flagged as poor quality0
Sequence length43
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA29400.018.51
TTATACT7050.014.9574474
GTATACG3250.014.81
CTAGTAC4050.014.6172843
CGCGCTA8750.014.37714324
TAATACC6050.014.0661154
TTAATAC5000.013.6900013
GTATTAA5450.013.5779821
GTATCAA39650.013.4375792
TAAGACT7600.013.3881584
CGGGTAA4750.013.242105524
ATTGACG7550.013.23178732
TATACTG8250.013.2303045
CGTTAAC1409.574338E-613.2142851
TAGACAG9450.013.1164035
TCTATAC5100.013.0588243
TTAGACT4700.012.9893614
TAACGCC7550.012.9867544
GTATTAG9000.012.951
GTGTAAG11150.012.9417041
Produced by FastQC (version 0.11.5)