Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042590.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3905911 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3285 | 0.0 | 18.302893 | 1 |
CGTTAGA | 550 | 0.0 | 17.49091 | 2 |
TCTAACG | 540 | 0.0 | 17.472223 | 2 |
TCGTTAG | 425 | 0.0 | 16.97647 | 1 |
CTAACGA | 405 | 0.0 | 16.901234 | 3 |
GTACTAG | 355 | 0.0 | 16.15493 | 1 |
TAGACTC | 620 | 0.0 | 15.814517 | 5 |
TAGGACG | 505 | 0.0 | 15.752476 | 4 |
GTTAGAC | 730 | 0.0 | 15.712329 | 3 |
ACGGACC | 640 | 0.0 | 15.609375 | 8 |
TGCGACG | 305 | 0.0 | 15.163935 | 22 |
TATACTG | 625 | 0.0 | 14.8 | 5 |
TAGTACT | 470 | 0.0 | 14.56383 | 4 |
GTCTAAC | 675 | 0.0 | 14.525926 | 1 |
CGGGTAA | 335 | 0.0 | 14.358209 | 24 |
GTATACT | 375 | 0.0 | 14.306666 | 4 |
TCTAGCG | 300 | 0.0 | 14.183333 | 28 |
TTAGACT | 605 | 0.0 | 14.066115 | 4 |
TATACCG | 250 | 0.0 | 14.059999 | 5 |
TAATACT | 435 | 0.0 | 14.034483 | 4 |