FastQCFastQC Report
Fri 29 Apr 2016
ERR1042590.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042590.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3905911
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA32850.018.3028931
CGTTAGA5500.017.490912
TCTAACG5400.017.4722232
TCGTTAG4250.016.976471
CTAACGA4050.016.9012343
GTACTAG3550.016.154931
TAGACTC6200.015.8145175
TAGGACG5050.015.7524764
GTTAGAC7300.015.7123293
ACGGACC6400.015.6093758
TGCGACG3050.015.16393522
TATACTG6250.014.85
TAGTACT4700.014.563834
GTCTAAC6750.014.5259261
CGGGTAA3350.014.35820924
GTATACT3750.014.3066664
TCTAGCG3000.014.18333328
TTAGACT6050.014.0661154
TATACCG2500.014.0599995
TAATACT4350.014.0344834
Produced by FastQC (version 0.11.5)