Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042589.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5474477 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 19155 | 0.349896437595774 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18808 | 0.34355793256597844 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 10972 | 0.20042097172022094 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7220 | 0.0 | 20.344875 | 1 |
GCGCGAA | 65 | 6.908196E-5 | 19.923077 | 11 |
GTAAACG | 430 | 0.0 | 18.5 | 27 |
ACGGACC | 740 | 0.0 | 18.25 | 8 |
GACGGAC | 795 | 0.0 | 17.685535 | 7 |
CGGACCA | 850 | 0.0 | 16.32353 | 9 |
GTACTAG | 365 | 0.0 | 16.21918 | 1 |
TTAACGG | 300 | 0.0 | 15.416667 | 35 |
CGCAAGA | 965 | 0.0 | 15.336788 | 2 |
AAGACGG | 1075 | 0.0 | 14.799999 | 5 |
TAGACAG | 1030 | 0.0 | 14.728154 | 5 |
TAACGGC | 315 | 0.0 | 14.682539 | 36 |
TACCGTC | 595 | 0.0 | 14.613445 | 7 |
GTATCAA | 10000 | 0.0 | 14.578 | 2 |
GTATTAG | 1430 | 0.0 | 14.101398 | 1 |
TATACTG | 1080 | 0.0 | 14.046295 | 5 |
CGTCGTA | 505 | 0.0 | 13.920793 | 10 |
TCTATAC | 800 | 0.0 | 13.875001 | 3 |
TTAGACT | 600 | 0.0 | 13.875 | 4 |
ATACCGT | 860 | 0.0 | 13.767442 | 6 |