Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042584.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 21561301 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 51017 | 0.23661373680558515 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 41612 | 0.19299391998655369 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 38818 | 0.18003551826487652 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 26309 | 0.12201953861689516 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 15770 | 0.0 | 23.321497 | 1 |
GTATCAA | 24485 | 0.0 | 15.013069 | 2 |
ACGAACG | 1415 | 0.0 | 13.2049465 | 15 |
CGAACGA | 1390 | 0.0 | 13.176259 | 16 |
CTTATAC | 8175 | 0.0 | 13.170642 | 37 |
CTAGCGG | 1570 | 0.0 | 12.60828 | 29 |
TATACTG | 5915 | 0.0 | 12.541843 | 5 |
GACGGAC | 2680 | 0.0 | 12.494403 | 7 |
ACGGACC | 2770 | 0.0 | 12.48917 | 8 |
TACGACG | 1790 | 0.0 | 12.402235 | 5 |
TCTATAC | 3270 | 0.0 | 12.220183 | 3 |
TCTAGCG | 1595 | 0.0 | 12.178684 | 28 |
ATACCGT | 2505 | 0.0 | 11.816368 | 6 |
ATCAACG | 31335 | 0.0 | 11.666188 | 4 |
TCAACGC | 31550 | 0.0 | 11.604279 | 5 |
GCGTTAT | 2115 | 0.0 | 11.5461 | 1 |
TATACCG | 930 | 0.0 | 11.537634 | 5 |
TATCAAC | 32500 | 0.0 | 11.509847 | 3 |
GTATTAG | 4135 | 0.0 | 11.453445 | 1 |
TCTTATA | 12945 | 0.0 | 11.404403 | 37 |