Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042579.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9600451 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 32434 | 0.33783829530508513 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 30373 | 0.31637055384168933 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 14740 | 0.15353445374597507 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11847 | 0.12340045274956354 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8270 | 0.0 | 26.262392 | 1 |
GTATCAA | 11355 | 0.0 | 19.078379 | 2 |
GACGGAC | 1355 | 0.0 | 16.247232 | 7 |
TATACCG | 370 | 0.0 | 15.5 | 5 |
ACGGACC | 1475 | 0.0 | 15.050847 | 8 |
TATACTG | 2300 | 0.0 | 14.960869 | 5 |
TACCGTC | 865 | 0.0 | 14.757225 | 7 |
ATACCGT | 1245 | 0.0 | 14.116465 | 6 |
CGAACGA | 525 | 0.0 | 14.095238 | 16 |
CGGACCA | 1585 | 0.0 | 14.006309 | 9 |
CGCGATA | 80 | 0.0063030715 | 13.875 | 14 |
TAACGCC | 885 | 0.0 | 13.58757 | 4 |
CGTCGTA | 700 | 0.0 | 13.478571 | 10 |
TAGACAG | 1690 | 0.0 | 13.464497 | 5 |
ATCAACG | 16490 | 0.0 | 13.328078 | 4 |
TACACTG | 3215 | 0.0 | 13.292379 | 5 |
CCGTCGT | 710 | 0.0 | 13.288733 | 9 |
TCAACGC | 16635 | 0.0 | 13.2675085 | 5 |
TACGACG | 630 | 0.0 | 13.214285 | 5 |
ACGAACG | 575 | 0.0 | 13.191303 | 15 |