FastQCFastQC Report
Fri 29 Apr 2016
ERR1042579.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042579.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9600451
Sequences flagged as poor quality0
Sequence length43
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT324340.33783829530508513No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT303730.31637055384168933No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT147400.15353445374597507No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT118470.12340045274956354No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA82700.026.2623921
GTATCAA113550.019.0783792
GACGGAC13550.016.2472327
TATACCG3700.015.55
ACGGACC14750.015.0508478
TATACTG23000.014.9608695
TACCGTC8650.014.7572257
ATACCGT12450.014.1164656
CGAACGA5250.014.09523816
CGGACCA15850.014.0063099
CGCGATA800.006303071513.87514
TAACGCC8850.013.587574
CGTCGTA7000.013.47857110
TAGACAG16900.013.4644975
ATCAACG164900.013.3280784
TACACTG32150.013.2923795
CCGTCGT7100.013.2887339
TCAACGC166350.013.26750855
TACGACG6300.013.2142855
ACGAACG5750.013.19130315