Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042578.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9982801 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 24101 | 0.24142522724834442 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 21876 | 0.21913689354320495 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 14701 | 0.1472632781120249 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7030 | 0.0 | 23.973684 | 1 |
GTATCAA | 9955 | 0.0 | 16.799599 | 2 |
TATACTG | 2165 | 0.0 | 15.039261 | 5 |
ACGGACC | 1325 | 0.0 | 14.101887 | 8 |
GACGGAC | 1235 | 0.0 | 13.931173 | 7 |
TCTATAC | 1435 | 0.0 | 13.665506 | 3 |
CTACACT | 2340 | 0.0 | 13.440171 | 4 |
TAGACAG | 1845 | 0.0 | 12.934959 | 5 |
CGAACGA | 360 | 0.0 | 12.847222 | 16 |
TAATACT | 2075 | 0.0 | 12.660241 | 4 |
ATACTGT | 3055 | 0.0 | 12.535188 | 6 |
TCAACGC | 13545 | 0.0 | 12.483573 | 5 |
ATCAACG | 13570 | 0.0 | 12.460575 | 4 |
GTATTAG | 1700 | 0.0 | 12.297059 | 1 |
CAACGCA | 13710 | 0.0 | 12.292851 | 6 |
TATCAAC | 14060 | 0.0 | 12.078947 | 3 |
TAGACTG | 1285 | 0.0 | 11.949416 | 5 |
CTAGTAC | 605 | 0.0 | 11.925619 | 3 |
AAGACGG | 1740 | 0.0 | 11.908047 | 5 |
AACGCAG | 14355 | 0.0 | 11.908046 | 7 |