FastQCFastQC Report
Fri 29 Apr 2016
ERR1042577.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042577.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1191085
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TATATAC1151.3460522E-1020.9130443
TAGCGTG555.1432446E-420.1818187
GACCCTA701.2192445E-418.57
CCGTCGT609.2370843E-418.59
CGACTAT609.2370843E-418.536
GGTATCA8350.017.2814371
TTATACT2050.017.1463434
TAATACA2550.016.6862744
GTAAGGT1005.8781498E-616.6500024
TGCGGTC904.4461747E-516.44444512
GTACTAG904.4461747E-516.4444451
TATACTG2250.016.4444455
TACACCG1352.219349E-816.4444435
TATACTT1606.2937033E-1016.18755
CGAACGA1151.2422097E-616.08695616
TATACAG1853.0377123E-1015.05
GTGCGGT1001.09341665E-414.811
TACACGC750.004104520714.85
CTATATA2151.2732926E-1114.6279072
TTAATAC1152.2098659E-514.4782613
Produced by FastQC (version 0.11.5)