Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042574.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6622159 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 13878 | 0.20956911484607965 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12214 | 0.18444135817336915 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 8747 | 0.13208683150011952 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4900 | 0.0 | 22.12449 | 1 |
GTATCAA | 7090 | 0.0 | 15.186179 | 2 |
GACGGAC | 735 | 0.0 | 14.850341 | 7 |
TATACTG | 1150 | 0.0 | 14.317391 | 5 |
ATAACGC | 745 | 0.0 | 14.154362 | 3 |
ACGCGCG | 570 | 0.0 | 13.95614 | 21 |
ATACCGT | 875 | 0.0 | 13.954286 | 6 |
ACGGACC | 830 | 0.0 | 13.819277 | 8 |
GTATAGA | 1125 | 0.0 | 13.813333 | 1 |
GTATTAG | 1585 | 0.0 | 13.772872 | 1 |
TAACGCC | 665 | 0.0 | 13.631578 | 4 |
GTATACG | 380 | 0.0 | 13.6315775 | 1 |
TACCGTC | 655 | 0.0 | 13.557251 | 7 |
CTAGTAC | 465 | 0.0 | 13.526883 | 3 |
TTAGACT | 780 | 0.0 | 13.51923 | 4 |
TCTATAC | 935 | 0.0 | 13.454546 | 3 |
CGCGCTA | 595 | 0.0 | 13.369748 | 24 |
GTACTAG | 540 | 0.0 | 13.361112 | 1 |
GTAAGAC | 685 | 0.0 | 13.233578 | 3 |
TAATACT | 1670 | 0.0 | 13.182634 | 4 |