FastQCFastQC Report
Fri 29 Apr 2016
ERR1042572.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042572.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4477297
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA13050.020.272031
TATACTG8150.014.5276075
CTTACAC7950.013.9622653
TTACACC8400.013.8750014
GTATCAA18500.013.72
CTATACT7650.013.0588244
TACACTG14600.013.051375
ATTACAC5750.012.8695643
GTATAGA6800.012.7867651
TCTACAC8250.012.7818183
TAGCACT8000.012.7187494
GTGTAAG9200.012.4673921
TTAGACG1501.9463923E-512.3333344
TTACGTA1050.002645630212.3333344
TAATACT6150.012.3333334
GTTAGAC2401.1314114E-912.3333333
ACCGTGC6400.012.1406268
TTACACT8100.012.10493854
TCTATAC4750.012.0736843
TATAGGT4450.012.0561794
Produced by FastQC (version 0.11.5)