FastQCFastQC Report
Fri 29 Apr 2016
ERR1042567.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042567.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9238609
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA40250.021.2807461
GTACTAG6450.015.7751931
GTATCAA56950.014.7805092
GACGGAC10450.014.6937817
ATTGACG9750.014.42051232
TAACGCC8100.014.3888894
TATACTG19450.014.0771215
ATAACGC9300.013.7258063
TCTAGCG6250.013.61599928
TCTATAC12800.013.58593753
ACGGACC11650.013.3390558
ATACCGT11650.013.3390556
GTATACG3200.013.2968751
CTTACAC16700.013.2934133
TATACCG4400.013.0340915
GCGTTAT7950.013.0314471
TCGTTTA8100.013.01851830
TAGACAG17150.012.9446075
CGTCGTA7500.012.82666610
TACCGTC9400.012.7925547
Produced by FastQC (version 0.11.5)