FastQCFastQC Report
Fri 29 Apr 2016
ERR1042566.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042566.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2919056
Sequences flagged as poor quality0
Sequence length43
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTACTAG2300.020.1086961
GGTATCA9250.020.01
ATTAGAC759.27379E-619.7333343
GTATACG1750.019.0285721
TATACTG3900.018.0256425
GTATACT1554.0199666E-1016.7096794
TATACGG2150.015.4883722
TCTAGAC4100.015.3414643
CTAGTAC1853.0559022E-1015.03
TATAGGT2251.8189894E-1214.84
GTATCAA11900.014.6134452
TACTAGG3950.014.5189892
GACGGAC2550.014.5098047
TAGTACT2353.6379788E-1214.1702144
GTATAAG3450.013.9420281
CTAGACA4650.013.9247314
CGCGATA800.00630168613.87514
CGCGCTA3350.013.80596924
TTTAGAC1907.1395334E-913.6315793
CGAACGA1102.4583927E-413.45454516
Produced by FastQC (version 0.11.5)