Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042557.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6815016 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 20215 | 0.2966243953058951 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 18081 | 0.2653111892914118 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 15714 | 0.23057906247028623 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5950 | 0.0 | 28.791595 | 1 |
GTATCAA | 10050 | 0.0 | 16.953732 | 2 |
TAGTACT | 840 | 0.0 | 13.434524 | 4 |
TATACTG | 1450 | 0.0 | 13.141379 | 5 |
GTATACG | 315 | 0.0 | 12.920634 | 1 |
CGCGATA | 130 | 7.007673E-5 | 12.807693 | 14 |
TACGACG | 260 | 2.3646862E-11 | 12.807693 | 5 |
GTGTAAG | 990 | 0.0 | 12.707071 | 1 |
CGAACGA | 400 | 0.0 | 12.487499 | 16 |
TATCAAC | 14450 | 0.0 | 11.906574 | 3 |
ATCAACG | 14435 | 0.0 | 11.893314 | 4 |
GCGTAGA | 380 | 0.0 | 11.684211 | 1 |
TAATACT | 1220 | 0.0 | 11.6762295 | 4 |
TCAACGC | 14775 | 0.0 | 11.669713 | 5 |
TATATAC | 1270 | 0.0 | 11.653543 | 3 |
GTATTAA | 1425 | 0.0 | 11.554386 | 1 |
CTAACGC | 305 | 3.092282E-11 | 11.5245905 | 3 |
CAACGCA | 14895 | 0.0 | 11.513596 | 6 |
TACCCCG | 310 | 4.1836756E-11 | 11.33871 | 5 |
GTATAAG | 1195 | 0.0 | 11.301255 | 1 |