FastQCFastQC Report
Fri 29 Apr 2016
ERR1042557.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042557.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences6815016
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT202150.2966243953058951No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT180810.2653111892914118No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT157140.23057906247028623No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA59500.028.7915951
GTATCAA100500.016.9537322
TAGTACT8400.013.4345244
TATACTG14500.013.1413795
GTATACG3150.012.9206341
CGCGATA1307.007673E-512.80769314
TACGACG2602.3646862E-1112.8076935
GTGTAAG9900.012.7070711
CGAACGA4000.012.48749916
TATCAAC144500.011.9065743
ATCAACG144350.011.8933144
GCGTAGA3800.011.6842111
TAATACT12200.011.67622954
TCAACGC147750.011.6697135
TATATAC12700.011.6535433
GTATTAA14250.011.5543861
CTAACGC3053.092282E-1111.52459053
CAACGCA148950.011.5135966
TACCCCG3104.1836756E-1111.338715
GTATAAG11950.011.3012551