Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042553.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6396537 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 49 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 9820 | 0.15352056902039338 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8256 | 0.12906983888313317 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 6468 | 0.10111721389245462 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4185 | 0.0 | 26.434885 | 1 |
GTATCAA | 6170 | 0.0 | 17.660454 | 2 |
TCTATAC | 765 | 0.0 | 16.202614 | 3 |
ACGGACC | 835 | 0.0 | 14.844311 | 8 |
TATACCG | 315 | 0.0 | 14.682539 | 5 |
TACCGTC | 760 | 0.0 | 13.875 | 7 |
ACCCGTT | 700 | 0.0 | 13.742857 | 30 |
TAATACT | 1215 | 0.0 | 13.703704 | 4 |
TAGACTG | 1065 | 0.0 | 13.549296 | 5 |
ATACCGT | 995 | 0.0 | 13.386934 | 6 |
TACTAGG | 850 | 0.0 | 13.276469 | 2 |
TGCGACG | 265 | 1.8189894E-12 | 13.26415 | 22 |
GTAAGAC | 750 | 0.0 | 13.073334 | 3 |
GTACTAG | 610 | 0.0 | 13.040984 | 1 |
GACGGAC | 880 | 0.0 | 13.034091 | 7 |
CGAACGA | 500 | 0.0 | 12.950001 | 16 |
GTGTAAG | 1175 | 0.0 | 12.910639 | 1 |
GTATACG | 350 | 0.0 | 12.685714 | 1 |
TACGACG | 585 | 0.0 | 12.649573 | 5 |
ATCAACG | 8895 | 0.0 | 12.541315 | 4 |