Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042542.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6150594 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 7252 | 0.11790731106621573 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3925 | 0.0 | 24.226751 | 1 |
GTATCAA | 6035 | 0.0 | 15.633803 | 2 |
TCGTTTA | 820 | 0.0 | 14.8902445 | 30 |
GTATTAG | 1120 | 0.0 | 14.700893 | 1 |
GTAAACG | 810 | 0.0 | 14.617284 | 27 |
TCTAGCG | 690 | 0.0 | 14.478261 | 28 |
TATACTG | 1075 | 0.0 | 14.455813 | 5 |
AAGACGG | 1425 | 0.0 | 14.410526 | 5 |
GACGGAC | 1310 | 0.0 | 14.40458 | 7 |
TAAACGC | 815 | 0.0 | 14.300614 | 28 |
ACGGACC | 1340 | 0.0 | 14.082089 | 8 |
CAAGACG | 1640 | 0.0 | 13.987805 | 4 |
TATACCG | 225 | 2.7284841E-11 | 13.9777775 | 5 |
CGCAAGA | 1445 | 0.0 | 13.955018 | 2 |
TACCGTC | 1070 | 0.0 | 13.658878 | 7 |
CGCAATA | 805 | 0.0 | 13.329193 | 36 |
CTAGCGG | 765 | 0.0 | 13.300653 | 29 |
TAACGCC | 955 | 0.0 | 13.172774 | 4 |
CGGACCA | 1445 | 0.0 | 12.802769 | 9 |
CGCGCTA | 1390 | 0.0 | 12.643885 | 24 |