Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042540.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5914292 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 7665 | 0.12960131153483798 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6372 | 0.10773901592954829 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 3870 | 0.0 | 22.99354 | 1 |
TCTAGCG | 730 | 0.0 | 17.232876 | 28 |
CTAGCGG | 800 | 0.0 | 15.725 | 29 |
GTATCAA | 5635 | 0.0 | 15.627329 | 2 |
GACGGAC | 1245 | 0.0 | 15.453815 | 7 |
TACGACG | 995 | 0.0 | 15.060302 | 5 |
GTATTAG | 1255 | 0.0 | 14.888446 | 1 |
ACGGACC | 1310 | 0.0 | 14.828243 | 8 |
CAAGACG | 1540 | 0.0 | 14.655844 | 4 |
CGACGGT | 1010 | 0.0 | 14.653466 | 7 |
AAGACGG | 1455 | 0.0 | 14.621992 | 5 |
ACGACGG | 1045 | 0.0 | 14.16268 | 6 |
CGCAATA | 955 | 0.0 | 14.141361 | 36 |
GACGGTA | 1055 | 0.0 | 13.85308 | 8 |
CGGACCA | 1465 | 0.0 | 13.764504 | 9 |
TATACTG | 995 | 0.0 | 13.572865 | 5 |
TACCGTC | 900 | 0.0 | 13.566667 | 7 |
AGACGGA | 1550 | 0.0 | 13.487096 | 6 |
CGGTCCA | 1030 | 0.0 | 13.470873 | 10 |
ACGGTAT | 1100 | 0.0 | 13.454546 | 9 |