Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042539.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6768867 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 10874 | 0.16064726932882564 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7992 | 0.11806998128342601 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 7033 | 0.10390217447026216 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5405 | 0.0 | 23.274744 | 1 |
GTACTAG | 505 | 0.0 | 15.752476 | 1 |
GTATCAA | 7960 | 0.0 | 15.711055 | 2 |
CTAGCGG | 895 | 0.0 | 14.262568 | 29 |
TCGTTTA | 1030 | 0.0 | 14.18932 | 30 |
GTAAACG | 1270 | 0.0 | 14.129921 | 27 |
TAAACGC | 1300 | 0.0 | 13.946154 | 28 |
TCTAGCG | 945 | 0.0 | 13.703704 | 28 |
TTAACGG | 300 | 0.0 | 13.566667 | 35 |
TATACTG | 1180 | 0.0 | 13.48305 | 5 |
TACGACG | 965 | 0.0 | 13.419689 | 5 |
TAACGCC | 1210 | 0.0 | 13.301653 | 4 |
ACGAACG | 580 | 0.0 | 13.077586 | 15 |
CGCTTCG | 1460 | 0.0 | 13.05137 | 32 |
GACGGAC | 1370 | 0.0 | 12.963504 | 7 |
TTCGGGC | 1435 | 0.0 | 12.891986 | 35 |
TTAGACT | 750 | 0.0 | 12.826666 | 4 |
ACGGACC | 1385 | 0.0 | 12.823105 | 8 |
GTATAGA | 910 | 0.0 | 12.807692 | 1 |
CGAACGA | 610 | 0.0 | 12.737705 | 16 |