Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042537.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5492606 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 9607 | 0.17490786704890174 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 8773 | 0.15972381780160458 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 7292 | 0.1327602962965121 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 5255 | 0.0 | 22.178877 | 1 |
AAGACGG | 2040 | 0.0 | 17.321077 | 5 |
GACGGAC | 1885 | 0.0 | 16.978779 | 7 |
TCGTTTA | 1280 | 0.0 | 16.910156 | 30 |
ACGGACC | 1885 | 0.0 | 16.880636 | 8 |
CAAGACG | 2090 | 0.0 | 16.28708 | 4 |
GTATCAA | 7275 | 0.0 | 15.969761 | 2 |
CGGACCA | 2090 | 0.0 | 15.401914 | 9 |
TAAACGC | 1280 | 0.0 | 15.175781 | 28 |
CGAACGA | 805 | 0.0 | 15.167702 | 16 |
CGTTTAT | 1480 | 0.0 | 14.875 | 31 |
CCGGTCG | 1535 | 0.0 | 14.824104 | 20 |
ACGAACG | 825 | 0.0 | 14.8 | 15 |
TACGACG | 1415 | 0.0 | 14.773852 | 5 |
ATGGTCG | 1410 | 0.0 | 14.695036 | 36 |
GTAAACG | 1315 | 0.0 | 14.631178 | 27 |
CGCAAGA | 2195 | 0.0 | 14.580865 | 2 |
GCGCAAG | 2285 | 0.0 | 14.573304 | 1 |
ATAACGC | 1625 | 0.0 | 14.572308 | 3 |
TAACGCC | 1655 | 0.0 | 14.196375 | 4 |