FastQCFastQC Report
Fri 29 Apr 2016
ERR1042537.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042537.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5492606
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT96070.17490786704890174No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT87730.15972381780160458No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT72920.1327602962965121No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA52550.022.1788771
AAGACGG20400.017.3210775
GACGGAC18850.016.9787797
TCGTTTA12800.016.91015630
ACGGACC18850.016.8806368
CAAGACG20900.016.287084
GTATCAA72750.015.9697612
CGGACCA20900.015.4019149
TAAACGC12800.015.17578128
CGAACGA8050.015.16770216
CGTTTAT14800.014.87531
CCGGTCG15350.014.82410420
ACGAACG8250.014.815
TACGACG14150.014.7738525
ATGGTCG14100.014.69503636
GTAAACG13150.014.63117827
CGCAAGA21950.014.5808652
GCGCAAG22850.014.5733041
ATAACGC16250.014.5723083
TAACGCC16550.014.1963754