Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042530.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 5003964 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 50 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 7023 | 0.14034873152564648 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5639 | 0.11269065884566716 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 5472 | 0.10935330470003381 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 4100 | 0.0 | 21.839024 | 1 |
TATCGCG | 110 | 3.8593498E-8 | 18.5 | 7 |
GTACTAG | 260 | 0.0 | 17.788462 | 1 |
TCGTTTA | 875 | 0.0 | 17.337143 | 30 |
TCTAGCG | 705 | 0.0 | 16.531916 | 28 |
GACGGAC | 1235 | 0.0 | 16.178139 | 7 |
TAAACGC | 1060 | 0.0 | 16.056604 | 28 |
CTAGCGG | 730 | 0.0 | 15.965754 | 29 |
CGACGGT | 820 | 0.0 | 15.792682 | 7 |
TACGACG | 825 | 0.0 | 15.696969 | 5 |
CTAGTAC | 320 | 0.0 | 15.609376 | 3 |
GTAAACG | 1070 | 0.0 | 15.560747 | 27 |
ACGACGG | 855 | 0.0 | 15.362573 | 6 |
CGTTTAT | 985 | 0.0 | 15.213199 | 31 |
AAGACGG | 1390 | 0.0 | 15.172662 | 5 |
ACGGACC | 1295 | 0.0 | 15.1428585 | 8 |
AGACGGA | 1405 | 0.0 | 14.747332 | 6 |
CGCAAGA | 1345 | 0.0 | 14.717472 | 2 |
GACGGTA | 875 | 0.0 | 14.588572 | 8 |
GTATCAA | 6070 | 0.0 | 14.568368 | 2 |