FastQCFastQC Report
Fri 29 Apr 2016
ERR1042530.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042530.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5003964
Sequences flagged as poor quality0
Sequence length43
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT70230.14034873152564648No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT56390.11269065884566716No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT54720.10935330470003381No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA41000.021.8390241
TATCGCG1103.8593498E-818.57
GTACTAG2600.017.7884621
TCGTTTA8750.017.33714330
TCTAGCG7050.016.53191628
GACGGAC12350.016.1781397
TAAACGC10600.016.05660428
CTAGCGG7300.015.96575429
CGACGGT8200.015.7926827
TACGACG8250.015.6969695
CTAGTAC3200.015.6093763
GTAAACG10700.015.56074727
ACGACGG8550.015.3625736
CGTTTAT9850.015.21319931
AAGACGG13900.015.1726625
ACGGACC12950.015.14285858
AGACGGA14050.014.7473326
CGCAAGA13450.014.7174722
GACGGTA8750.014.5885728
GTATCAA60700.014.5683682