ERR1042528.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	ERR1042528.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	141617
Sequences flagged as poor quality	0
Sequence length	43
%GC	55

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGT	6714	4.740956241129243	No Hit
TCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTT	3147	2.2221908386704987	RNA PCR Primer, Index 23 (95% over 23bp)
ATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATG	2819	1.9905802269501542	No Hit
ACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCC	2233	1.5767880974741733	No Hit
CATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTC	2091	1.476517649717195	RNA PCR Primer, Index 23 (95% over 21bp)
CTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTC	664	0.46887026275094096	RNA PCR Primer, Index 23 (95% over 24bp)
CACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCG	592	0.4180289089586702	No Hit
TATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTAT	326	0.23019835189278123	No Hit
TTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTA	275	0.1941857262899228	No Hit
ACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGT	159	0.11227465629126447	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTATAC	800	0.0	35.84375	1
TTATACA	845	0.0	34.372784	2
TATACAC	910	0.0	32.12088	3
CGTCTTC	115	0.0	30.565218	37
AAACCGC	25	0.005480283	29.6	6
GTTCAAT	25	0.005480283	29.6	11
CCGTCTT	470	0.0	28.734041	37
GCCGTCT	485	0.0	27.845362	36
TACACAT	1170	0.0	24.666668	5
ATACACA	1185	0.0	24.510548	4
AGAACCT	40	0.0019228817	23.125002	37
ATTGAGC	45	0.0038095121	20.555555	3
ACACATC	1425	0.0	20.25263	6
CACATCT	1520	0.0	18.865131	7
GTTTTTG	50	0.0070052026	18.5	35
CAGTACA	50	0.0070052026	18.5	4
ACATCTC	1570	0.0	18.264332	8
TGCCGTC	740	0.0	18.25	35
ATGCCGT	760	0.0	18.013159	34
GGCTGTC	75	2.0511857E-4	17.266666	37