FastQCFastQC Report
Fri 29 Apr 2016
ERR1042528.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042528.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences141617
Sequences flagged as poor quality0
Sequence length43
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGT67144.740956241129243No Hit
TCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTT31472.2221908386704987RNA PCR Primer, Index 23 (95% over 23bp)
ATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATG28191.9905802269501542No Hit
ACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCC22331.5767880974741733No Hit
CATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTC20911.476517649717195RNA PCR Primer, Index 23 (95% over 21bp)
CTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTC6640.46887026275094096RNA PCR Primer, Index 23 (95% over 24bp)
CACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCG5920.4180289089586702No Hit
TATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTAT3260.23019835189278123No Hit
TTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTA2750.1941857262899228No Hit
ACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGT1590.11227465629126447No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTTATAC8000.035.843751
TTATACA8450.034.3727842
TATACAC9100.032.120883
CGTCTTC1150.030.56521837
AAACCGC250.00548028329.66
GTTCAAT250.00548028329.611
CCGTCTT4700.028.73404137
GCCGTCT4850.027.84536236
TACACAT11700.024.6666685
ATACACA11850.024.5105484
AGAACCT400.001922881723.12500237
ATTGAGC450.003809512120.5555553
ACACATC14250.020.252636
CACATCT15200.018.8651317
GTTTTTG500.007005202618.535
CAGTACA500.007005202618.54
ACATCTC15700.018.2643328
TGCCGTC7400.018.2535
ATGCCGT7600.018.01315934
GGCTGTC752.0511857E-417.26666637