Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042528.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 141617 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 55 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CTTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGT | 6714 | 4.740956241129243 | No Hit |
TCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTT | 3147 | 2.2221908386704987 | RNA PCR Primer, Index 23 (95% over 23bp) |
ATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATG | 2819 | 1.9905802269501542 | No Hit |
ACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCC | 2233 | 1.5767880974741733 | No Hit |
CATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTC | 2091 | 1.476517649717195 | RNA PCR Primer, Index 23 (95% over 21bp) |
CTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGTCTTC | 664 | 0.46887026275094096 | RNA PCR Primer, Index 23 (95% over 24bp) |
CACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCG | 592 | 0.4180289089586702 | No Hit |
TATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTAT | 326 | 0.23019835189278123 | No Hit |
TTATACACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTA | 275 | 0.1941857262899228 | No Hit |
ACATCTCCGAGCCCACGAGACCAGAGAGGATCTCGTATGCCGT | 159 | 0.11227465629126447 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CTTATAC | 800 | 0.0 | 35.84375 | 1 |
TTATACA | 845 | 0.0 | 34.372784 | 2 |
TATACAC | 910 | 0.0 | 32.12088 | 3 |
CGTCTTC | 115 | 0.0 | 30.565218 | 37 |
AAACCGC | 25 | 0.005480283 | 29.6 | 6 |
GTTCAAT | 25 | 0.005480283 | 29.6 | 11 |
CCGTCTT | 470 | 0.0 | 28.734041 | 37 |
GCCGTCT | 485 | 0.0 | 27.845362 | 36 |
TACACAT | 1170 | 0.0 | 24.666668 | 5 |
ATACACA | 1185 | 0.0 | 24.510548 | 4 |
AGAACCT | 40 | 0.0019228817 | 23.125002 | 37 |
ATTGAGC | 45 | 0.0038095121 | 20.555555 | 3 |
ACACATC | 1425 | 0.0 | 20.25263 | 6 |
CACATCT | 1520 | 0.0 | 18.865131 | 7 |
GTTTTTG | 50 | 0.0070052026 | 18.5 | 35 |
CAGTACA | 50 | 0.0070052026 | 18.5 | 4 |
ACATCTC | 1570 | 0.0 | 18.264332 | 8 |
TGCCGTC | 740 | 0.0 | 18.25 | 35 |
ATGCCGT | 760 | 0.0 | 18.013159 | 34 |
GGCTGTC | 75 | 2.0511857E-4 | 17.266666 | 37 |