Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042525.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 4679833 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 5609 | 0.11985470421700946 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 5391 | 0.11519641833373113 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 5139 | 0.10981161079893235 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 5018 | 0.10722604845087422 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GACGGAC | 1275 | 0.0 | 16.250978 | 7 |
ACGGACC | 1290 | 0.0 | 16.205427 | 8 |
CGAACGA | 555 | 0.0 | 16.0 | 16 |
ACGAACG | 570 | 0.0 | 15.578948 | 15 |
CGGACCA | 1370 | 0.0 | 15.259124 | 9 |
AAGACGG | 1555 | 0.0 | 15.228294 | 5 |
TAACGAA | 640 | 0.0 | 15.03125 | 13 |
CAAGACG | 1605 | 0.0 | 14.984425 | 4 |
CGAACGT | 360 | 0.0 | 14.902779 | 4 |
CGTTATT | 885 | 0.0 | 14.841807 | 2 |
TCGTTTA | 900 | 0.0 | 14.8 | 30 |
CGAAAGC | 1410 | 0.0 | 14.432624 | 19 |
AGACGGA | 1480 | 0.0 | 14.375 | 6 |
GCGTTAT | 960 | 0.0 | 14.260416 | 1 |
CGCAAGA | 1550 | 0.0 | 14.203227 | 2 |
GGTCTAG | 380 | 0.0 | 14.118422 | 1 |
AACGAAC | 685 | 0.0 | 14.043796 | 14 |
GCGAAAG | 1465 | 0.0 | 13.764505 | 18 |
TCGAACG | 390 | 0.0 | 13.756411 | 3 |
ATAACGA | 720 | 0.0 | 13.361112 | 12 |