FastQCFastQC Report
Fri 29 Apr 2016
ERR1042525.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042525.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4679833
Sequences flagged as poor quality0
Sequence length43
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC56090.11985470421700946No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT53910.11519641833373113No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC51390.10981161079893235No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG50180.10722604845087422No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GACGGAC12750.016.2509787
ACGGACC12900.016.2054278
CGAACGA5550.016.016
ACGAACG5700.015.57894815
CGGACCA13700.015.2591249
AAGACGG15550.015.2282945
TAACGAA6400.015.0312513
CAAGACG16050.014.9844254
CGAACGT3600.014.9027794
CGTTATT8850.014.8418072
TCGTTTA9000.014.830
CGAAAGC14100.014.43262419
AGACGGA14800.014.3756
GCGTTAT9600.014.2604161
CGCAAGA15500.014.2032272
GGTCTAG3800.014.1184221
AACGAAC6850.014.04379614
GCGAAAG14650.013.76450518
TCGAACG3900.013.7564113
ATAACGA7200.013.36111212