Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042521.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3044566 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 51 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 5903 | 0.19388641927946382 | No Hit |
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGC | 3772 | 0.12389286354771091 | No Hit |
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 3700 | 0.12152799446620635 | No Hit |
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGG | 3336 | 0.10957226744304444 | No Hit |
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGG | 3257 | 0.10697748053417137 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2245 | 0.0 | 22.743874 | 1 |
TCGTTTA | 765 | 0.0 | 18.137255 | 30 |
AAGACGG | 1400 | 0.0 | 18.103573 | 5 |
CGCAAGA | 1375 | 0.0 | 18.02909 | 2 |
ATGGTCG | 790 | 0.0 | 17.797468 | 36 |
TGGTCGG | 790 | 0.0 | 17.797468 | 37 |
GCGCAAG | 1475 | 0.0 | 17.308474 | 1 |
ACGGACC | 1415 | 0.0 | 17.257952 | 8 |
CGTTTAT | 815 | 0.0 | 17.251535 | 31 |
CAAGACG | 1405 | 0.0 | 17.24911 | 4 |
TACCGTC | 635 | 0.0 | 16.897638 | 7 |
GTATCAA | 2980 | 0.0 | 16.761745 | 2 |
AGACGGA | 1545 | 0.0 | 16.04531 | 6 |
GACGGAC | 1500 | 0.0 | 16.033335 | 7 |
CGAACGT | 280 | 0.0 | 15.857142 | 4 |
CGGACCA | 1520 | 0.0 | 15.822369 | 9 |
TCGCGTA | 965 | 0.0 | 15.720207 | 9 |
ATACCGT | 740 | 0.0 | 15.500001 | 6 |
CCGGTCG | 890 | 0.0 | 15.382023 | 20 |
TATGGTC | 915 | 0.0 | 15.366121 | 35 |