Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042520.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1860385 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 12304 | 0.6613684801801778 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 10298 | 0.5535413368738191 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 8012 | 0.43066354544892593 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5082 | 0.27316926335140307 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2409 | 0.12948932613410666 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2107 | 0.1132561270919729 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2058 | 0.11062226367122933 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 2495 | 0.0 | 29.06613 | 1 |
CGATCGC | 90 | 2.1536725E-6 | 18.5 | 19 |
GTATCAA | 4180 | 0.0 | 17.305023 | 2 |
TAACGCC | 230 | 0.0 | 16.891304 | 4 |
AATCGTC | 135 | 2.2217137E-8 | 16.444445 | 28 |
TATACTG | 330 | 0.0 | 16.257576 | 5 |
GTATACG | 80 | 3.383973E-4 | 16.1875 | 1 |
CTAACGC | 70 | 0.0025933012 | 15.857143 | 3 |
TGCGTAT | 70 | 0.0025933012 | 15.857143 | 10 |
TAATACT | 700 | 0.0 | 15.592856 | 4 |
CGAACGA | 95 | 7.063427E-5 | 15.578948 | 16 |
CGCATCG | 190 | 2.7284841E-11 | 15.578948 | 13 |
TCTATAC | 250 | 0.0 | 15.54 | 3 |
AATAACG | 185 | 3.0559022E-10 | 15.0 | 2 |
TAACGGC | 125 | 2.9609437E-6 | 14.799999 | 36 |
CGCTAGA | 150 | 8.108873E-8 | 14.799999 | 37 |
TCTAACG | 75 | 0.004105676 | 14.799999 | 2 |
TCGTATT | 175 | 2.240995E-9 | 14.799999 | 26 |
TTAACGG | 125 | 2.9609437E-6 | 14.799999 | 35 |
CCGCTAG | 165 | 1.6467311E-8 | 14.575759 | 36 |