Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042519.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 6111943 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 28409 | 0.46481127196376015 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23768 | 0.38887797219313075 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 19087 | 0.312290216057316 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 11891 | 0.1945535159604728 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 7320 | 0.0 | 26.81489 | 1 |
GTATCAA | 10980 | 0.0 | 17.893442 | 2 |
TCTAGCG | 645 | 0.0 | 15.2015505 | 28 |
GACGGAC | 1085 | 0.0 | 15.004608 | 7 |
ACGGACC | 1105 | 0.0 | 14.900452 | 8 |
CTAGCGG | 690 | 0.0 | 14.746377 | 29 |
TACACCG | 415 | 0.0 | 14.710843 | 5 |
CTTACAC | 885 | 0.0 | 14.214689 | 3 |
AAGACGG | 1255 | 0.0 | 14.0039835 | 5 |
GCGCAAG | 1365 | 0.0 | 13.688644 | 1 |
ATAACGC | 680 | 0.0 | 13.330882 | 3 |
CAAGACG | 1395 | 0.0 | 13.261649 | 4 |
CGCAAGA | 1365 | 0.0 | 13.14652 | 2 |
TAGCGGC | 775 | 0.0 | 13.129031 | 30 |
ATCAACG | 15085 | 0.0 | 13.085515 | 4 |
TATCAAC | 15365 | 0.0 | 13.01562 | 3 |
CGCAATA | 785 | 0.0 | 12.961783 | 36 |
TATACTG | 1175 | 0.0 | 12.910639 | 5 |
TCAACGC | 15335 | 0.0 | 12.84806 | 5 |
ACGCGCG | 985 | 0.0 | 12.771574 | 21 |