Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042518.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1921055 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 41 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 32325 | 1.6826691583530922 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 27401 | 1.4263516661417814 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 19889 | 1.035316531801536 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14298 | 0.7442785344511219 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 7081 | 0.3685995455622041 | No Hit |
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6700 | 0.348766693301337 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 6458 | 0.3361694485582141 | No Hit |
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4522 | 0.23539149061323075 | No Hit |
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4231 | 0.22024356408327714 | No Hit |
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2842 | 0.1479395436361791 | No Hit |
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2747 | 0.14299434425354818 | No Hit |
GTACATGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 2098 | 0.10921082426062763 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGACGG | 25 | 0.0054972507 | 29.6 | 19 |
GGTATCA | 7190 | 0.0 | 29.589708 | 1 |
GAGCGTA | 70 | 5.1048664E-6 | 21.142857 | 6 |
ATTCGCG | 45 | 0.0038267293 | 20.555555 | 17 |
CGGTAAG | 45 | 0.0038267293 | 20.555555 | 28 |
TCGCGTC | 45 | 0.0038267293 | 20.555555 | 19 |
GGCGTCG | 65 | 6.905214E-5 | 19.923077 | 8 |
GCGTATC | 75 | 9.271083E-6 | 19.733334 | 8 |
AGAGCGT | 75 | 9.271083E-6 | 19.733334 | 5 |
CGTAGCG | 220 | 0.0 | 19.340908 | 15 |
GTATCAA | 11155 | 0.0 | 19.105333 | 2 |
CCGGGTA | 60 | 9.2398934E-4 | 18.5 | 32 |
GCGCATA | 70 | 1.2197382E-4 | 18.5 | 26 |
CCGACCA | 50 | 0.0070365597 | 18.5 | 9 |
CGCGTCA | 50 | 0.0070365597 | 18.5 | 20 |
CGATCGT | 60 | 9.2398934E-4 | 18.5 | 26 |
AACTCGA | 75 | 2.0681768E-4 | 17.266666 | 37 |
TTAACGG | 130 | 1.3948011E-8 | 17.076923 | 35 |
TCGTAGC | 265 | 0.0 | 16.754717 | 14 |
TAGCGGA | 255 | 0.0 | 16.686274 | 17 |