Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042506.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 9202719 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 75410 | 0.8194317353382191 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 55060 | 0.5983014367818902 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 43443 | 0.4720670054143781 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 23400 | 0.25427267745543464 | No Hit |
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC | 10883 | 0.11825852772425194 | No Hit |
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG | 10077 | 0.10950024661189807 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 29105 | 0.0 | 18.503178 | 1 |
ACGGACC | 1330 | 0.0 | 15.718044 | 8 |
GACGGAC | 1355 | 0.0 | 15.428044 | 7 |
CGTAGCG | 700 | 0.0 | 15.328571 | 15 |
TTTAGCG | 695 | 0.0 | 14.640287 | 26 |
TATACTG | 1405 | 0.0 | 14.615659 | 5 |
CGGACCA | 1435 | 0.0 | 14.567945 | 9 |
ATTGACG | 1820 | 0.0 | 14.434067 | 32 |
ATAACGA | 1195 | 0.0 | 14.242678 | 12 |
AAGACGG | 1615 | 0.0 | 14.204334 | 5 |
CGAACGA | 1150 | 0.0 | 14.156522 | 16 |
CTAGCGG | 590 | 0.0 | 14.11017 | 29 |
GCGGAAT | 810 | 0.0 | 13.932098 | 19 |
GTATCAA | 38805 | 0.0 | 13.8350725 | 2 |
TTGACGG | 1925 | 0.0 | 13.646752 | 33 |
AGTACCG | 1185 | 0.0 | 13.582279 | 5 |
CGCAAGA | 1610 | 0.0 | 13.559007 | 2 |
AATCGGG | 875 | 0.0 | 13.531428 | 23 |
TAACGAA | 1235 | 0.0 | 13.481782 | 13 |
CGATAAC | 1240 | 0.0 | 13.42742 | 10 |