Basic Statistics
Measure | Value |
---|---|
Filename | ERR1042505.fastq.gz |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 3802715 |
Sequences flagged as poor quality | 0 |
Sequence length | 43 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT | 29922 | 0.7868588626810056 | No Hit |
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT | 20760 | 0.5459257398989933 | No Hit |
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT | 13726 | 0.36095263515672354 | No Hit |
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8524 | 0.22415563617047296 | No Hit |
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT | 5440 | 0.14305568521437972 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGTATCA | 8765 | 0.0 | 21.993156 | 1 |
CGCAAGA | 1125 | 0.0 | 18.746668 | 2 |
CGTATAC | 130 | 6.9849193E-10 | 18.5 | 3 |
CGCGATA | 105 | 4.8044603E-7 | 17.619047 | 14 |
ACGGACC | 1115 | 0.0 | 17.587444 | 8 |
GCGCAAG | 1225 | 0.0 | 17.216326 | 1 |
GACGGAC | 1130 | 0.0 | 17.190266 | 7 |
CGGACCA | 1170 | 0.0 | 16.918802 | 9 |
GTATCAA | 11495 | 0.0 | 16.785994 | 2 |
CGAACGA | 490 | 0.0 | 16.612246 | 16 |
AAGACGG | 1305 | 0.0 | 15.59387 | 5 |
TTTCGGA | 830 | 0.0 | 15.156627 | 30 |
TATACTG | 565 | 0.0 | 15.061947 | 5 |
ACGAACG | 575 | 0.0 | 14.156522 | 15 |
AGACGGA | 1420 | 0.0 | 14.070423 | 6 |
TCGTTTA | 620 | 0.0 | 14.024194 | 30 |
TTCGGAA | 845 | 0.0 | 14.011835 | 31 |
TAACGAA | 595 | 0.0 | 13.991597 | 13 |
CAAGACG | 1490 | 0.0 | 13.90604 | 4 |
ATTGACG | 815 | 0.0 | 13.846625 | 32 |