FastQCFastQC Report
Fri 29 Apr 2016
ERR1042505.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameERR1042505.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3802715
Sequences flagged as poor quality0
Sequence length43
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT299220.7868588626810056No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT207600.5459257398989933No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT137260.36095263515672354No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT85240.22415563617047296No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTT54400.14305568521437972No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGTATCA87650.021.9931561
CGCAAGA11250.018.7466682
CGTATAC1306.9849193E-1018.53
CGCGATA1054.8044603E-717.61904714
ACGGACC11150.017.5874448
GCGCAAG12250.017.2163261
GACGGAC11300.017.1902667
CGGACCA11700.016.9188029
GTATCAA114950.016.7859942
CGAACGA4900.016.61224616
AAGACGG13050.015.593875
TTTCGGA8300.015.15662730
TATACTG5650.015.0619475
ACGAACG5750.014.15652215
AGACGGA14200.014.0704236
TCGTTTA6200.014.02419430
TTCGGAA8450.014.01183531
TAACGAA5950.013.99159713
CAAGACG14900.013.906044
ATTGACG8150.013.84662532